• Bioinformatics
  • Technological issues related to noise and reproducibility
  • Gene expression data
  • Microarray analysis related to Oral Cancer

Journal Articles

Jenssen, TK, Kuo, WP, Stokke, T, Hovig, E. (2002) Associations between gene expressions in breast cancer and patient survival,Human Genetics, 111(4-5):411-420.

Kuo, WP, Whipple, ME, Sonis, ST, Ohno-Machado, L, Jenssen TK. (2002) Gene Expression Profiling by DNA Microarrays and its Application to Dental Research, Oral Oncology, 38(7): 650-656.

Whipple, ME, Kuo, WP. (2002) DNA Microarrays in Otolaryngology-Head and Neck Surgery, Otolaryngology-Head and Neck Surgery,127(3): 196-204.

Todd, R, Lingen, MW, Kuo, WP. (2002) Gene Expression Profiling using Laser Capture Microdissection, Expert Reviews in Molecular Diagnosis,2(5):497-507 (Invited Technology Report).

Jenssen, TK, Langaas, M, Kuo, WP, Smith-Sorensen, B, Myklebost, O, Hovig, E. (2002)Analysis of repeatability in spotted cDNA microarrays, Nucleic Acid Research, 30(14): 3235-44.

Kuo, WP, Jenssen TK, Butte AJ, Ohno-Machado L, Kohane IS.(2002) Analysis of matched mRNA measurements from two different microarray technologies,Bioinformatics,18(3):405-412.

Kuo, WP, Sirois, DA, Pemble, CW. (2001) Locally aggressive solitary fibrous tumor in the infraorbital region: A case report and review of the literature, Oral Surg Oral Med Oral Pathol Oral Radiol Endod.92(3):308-11.

Abstracts

Kuo, WP, Hasina, R, Lingen, M (2002) Classification of oral squamous cell carcinomas based on gene expression patterns, Oral Surg Oral Med Oral Pathol Oral Radiol Endod.(AAOM), (extended abtract),93:415.

Kuo, WP, Jenessen, TK, Kim, J, Kohane, IS, Ohno-Machado, L. (2002) An analysis of matched mRNA measurements from the high-density HU6800 and cDNA microarrays, Currents in Computational Molecular Biology (RECOMB),(extended abstract) 109-110.

Jenessen, TK, Kuo, WP, Butte, AJ, Kohane, IS. (2001) Possible negative effects of reference mRNA sample in cDNA microarrays, Currents in Computational Molecular Biology (RECOMB),(extended abstract) 179-80.


Thesis

Kuo, WP. (2001) Reproducibility of mRNA Gene Expression Measurements Across Microarray Technologies, MIT Thesis